Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015949946.1_cds_XP_016490627.1_81034
CDS Infomation

[gene=LOC107810369] [db_xref=GeneID:107810369] [protein=rab3 GTPase-activating protein catalytic subunit-like isoform X1] [protein_id=XP_016490627.1] [location=join(13989..14045,14441..14484,14600..14663,14941..15055,15135..15211,15335..15432,16860..17031,17696..17918,18443..18569,19815..19924,20047..20139,20844..20975,21095..21228,21635..21724,21848..21955)] [gbkey=CDS]
Sequence

ATGGCATCAATTAGCAAAATACCAAGCTCTGCAAAGGATGAGGATCTAGAAGAGGAGATT
GAACATTTTGATGATTTTACCCTGGCCTCTTCGTGGGAAAGGTTCATATCTGAGATAGAG
GCAGTTTGCAGGCAGTGGTTGGCTGATGGCACCAAGAATTTGCTGAAAAATGGTGCTATT
AGTGTGAATATCTCTGAGGACCTATATAAGGTCAAAACTGACCTGAAGTATGCGATGAAA
AGCTATTGCATGGAGTACTATTTTGGAACACATAATGATGTTGGTCGAGGAAAAGGAAAT
GACTGGAGTTGTGCATTGCATGATCTGCAACTGTCTTTTGGGGTGAATGAGTTCCTGGTG
ATTGCTCCTCAAAGTGCCAGTGGAGTGGTTCTTGATGGACCGGAGGCCAGCAAGCTTCTA
AGTGCAGTTGCTATTGCCTTGTCAAATTGTTCCTGTTTGTGGCCAGCATTTGTTCCAGTG
CATGTTCCTTCTCGTAAAGCATACATTGGCATCCAGAACATGGGAACCCTTTACACTAGA
CGATTTGAAGCTGACCGTATAGGTAGCCAGGTGCCATTGAAGCTTATGCATCTGGAGGGA
TTGTATGAGCTATTTGTTTCTAAATTTGCCTTCTCCAATATGGACCTGTCCATGCATCTT
TTTCAAGTCAATCTCAAGATGAAGCTGACCTATCGTACACTTCCCTACGATGAGGATTCT
GATGTACAAGAACCTGAGGGAGGCATTACAGAAGCAGGGGGAAGTCCCAAAAGCAAACAT
CATAATAGAAAACCATGGGATGACGATTGTCCTTGGAGTGAGTGGTACTCTGCGGAGGAC
CCAGTAAAAGGTTTTGAGCTGCTTACTGCATGGTCTGAGAAGGCAATTGAGAGTTCACTA
GAAATGGCTGAGCTGGAAAATGCTTCACCTCTTGAGGCTGAGAAGTGGTCGATATCTCCA
TGCTTATCTGAGATTCTAAGTGCTGATTCTGATGGAAAGAGAATTGGATTTGCATCGCAG
TTGCAGCTTTTAATTGATGCTTTGCTTATGTCACTGGAAACACAATTTGTGGAAGATTTT
GTTTCAGTAGAGCACTCAAGACCTGAGAATTTAAAGTCTACTGCCGTCATACCTCCCCCA
ACTGTCCTTGATCGTGTGCTTAAAGACCTATTTTATGAGGTTGAAGCAGCCCAACCTGAT
TCTGCCGAAGGAGATCACAAATATTCCCGGACCATTAAAGGCGCTCCTCTTGAATCACTT
TTTGGGCAGTTCTGTCTGCACGCTCTCTGGGTTGGTGATTGCAATATAAGGGCTATTGCA
GCATTCTGGATAGAGTTTGTACGGGAAGTTCGCTGGTGCTGGGAAGAGTCACAGCCATTA
CCTAGAATGCCAGCCAATGGTGTAATTGACCTATCTACCTGTTTAATTAACCAGAAATTA
CACATGCTTGCAATTTGTATGGATAGAAAGCATCAGTTTAATCAAAAGGGTCCGAAGGCA
GATGAAAATGGAGTTTTTCTTTCTGCTCGTATTAAGACACTGAAGTCCAAAGTGTTATAT
CTTCTCAAGATGGAGATGCTCAGGCTTCTTGTTGGGAATGTGACAGGTGAAAAGCAAGTG
AGAACCTTTTGTGTAAATTGTTAA

Peptide Sequence

PEP ID

XP_016490627.1
PEP Infomation

PREDICTED: rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Nicotiana tabacum]
Sequence

MASISKIPSSAKDEDLEEEIEHFDDFTLASSWERFISEIEAVCRQWLADGTKNLLKNGAI
SVNISEDLYKVKTDLKYAMKSYCMEYYFGTHNDVGRGKGNDWSCALHDLQLSFGVNEFLV
IAPQSASGVVLDGPEASKLLSAVAIALSNCSCLWPAFVPVHVPSRKAYIGIQNMGTLYTR
RFEADRIGSQVPLKLMHLEGLYELFVSKFAFSNMDLSMHLFQVNLKMKLTYRTLPYDEDS
DVQEPEGGITEAGGSPKSKHHNRKPWDDDCPWSEWYSAEDPVKGFELLTAWSEKAIESSL
EMAELENASPLEAEKWSISPCLSEILSADSDGKRIGFASQLQLLIDALLMSLETQFVEDF
VSVEHSRPENLKSTAVIPPPTVLDRVLKDLFYEVEAAQPDSAEGDHKYSRTIKGAPLESL
FGQFCLHALWVGDCNIRAIAAFWIEFVREVRWCWEESQPLPRMPANGVIDLSTCLINQKL
HMLAICMDRKHQFNQKGPKADENGVFLSARIKTLKSKVLYLLKMEMLRLLVGNVTGEKQV
RTFCVNC

Transcript Sequence

Gene sequence data has not been registered.